Volume 14; Issue 3 Suppleme

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BMC Bioinformatics
Volume 14; Issue 3 Suppleme

BMC Bioinformatics

Volume 14; Issue 3 Suppleme

1

Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)

Zhouxi Wang, Pengcheng Yin, Joslynn S Lee, Ramya Parasuram…

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 829 KB

english, 2013

2

How to inherit statistically validated annotation within BAR+ protein clusters

Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli…

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 879 KB

english, 2013

3

Concomitant prediction of function and fold at the domain level with GO-based profiles

Daniel Lopez, Florencio Pazos

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 952 KB

english, 2013

4

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

Domenico Cozzetto, Daniel WA Buchan, Kevin Bryson, David T Jones

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 330 KB

english, 2013

5

Three-Level Prediction of Protein Function by Combining Profile-Sequence Search, Profile-Profile Search, and Domain Co-Occurrence Networks

Zheng Wang, Renzhi Cao, Jianlin Cheng

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 2.72 MB

english, 2013

6

Protein function prediction using domain families

Robert Rentzsch, Christine A Orengo

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2013

7

Homology-based inference sets the bar high for protein function prediction

Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo…

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2013

8

A domain-centric solution to functional genomics via dcGOPredictor

Hai Fang, Julian Gough

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2013

9

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex

Nadav Rappoport, Michal Linial

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2013

10

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

Jesse Gillis, Paul Pavlidis

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 493 KB

english, 2013

11

In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment

Meghana Chitale, Ishita K Khan, Daisuke Kihara

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2013

12

Function prediction from networks of local evolutionary similarity in protein structure

Serkan Erdin, Eric Venner, Andreas Martin Lisewski, Olivier Lichtarge

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2013

13

MS-kNN: protein function prediction by integrating multiple data sources

Liang Lan, Nemanja Djuric, Yuhong Guo, Slobodan Vucetic

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 739 KB

english, 2013

14

Combining heterogeneous data sources for accurate functional annotation of proteins

Artem Sokolov, Christopher Funk, Kiley Graim, Karin Verspoor…

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2013

15

Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge

Andrew Wong, Hagit Shatkay

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 242 KB

english, 2013